Papers
This section highlights the papers which have been published around issues raised by the Campaign. If you know of any other papers which support the messages of the Fixing Proteomics Campaign, and would like them to be added to this list, please contact us.
Amol Prakash, Brian Piening, Jeff Whiteaker, Heidi Zhang, Scott A. Shaffer, Daniel Martin, Laura Hohmann, Kelly Cooke, James M. Olson, Stacey Hansen, Mark R. Flory, Hookeun Lee, Julian Watts, David R. Goodlett, Ruedi Aebersold, Amanda Paulovich, and Benno Schwikowski. (2007). Assessing Bias in Experiment Design for Large Scale Mass Spectrometry-based Quantitative Proteomics. Mol. Cell. Proteomics. Oct 2007; 6: 1741 – 1748 more »
Harald Mischak, Rolf Apweiler , Rosamonde E. Banks , Mark Conaway, Joshua Coon, Anna Dominiczak, Jochen H. H. Ehrich, Danilo Fliser, Mark Girolami, Henning Hermjakob, Denis Hochstrasser, Joachim Jankowski, Bruce A. Julian, Walter Kolch, Ziad A. Massy, Christian Neusuess, Jan Novak, Karlheinz Peter, Kasper Rossing, Joost Schanstra, O. John Semmes, Dan Theodorescu, Visith Thongboonkerd, Eva M. Weissinger, Jennifer E. Van Eyk, Tadashi Yamamoto. (2007) Clinical proteomics: A need to define the field and to begin to set adequate standards. Proteomics - Clinical Applications. 2007 Jan; 1(2):148-156 more »
Taylor CF, Paton NW, Lilley KS, Binz PA, Julian RK Jr, Jones AR, Zhu W, Apweiler R, Aebersold R, Deutsch EW, Dunn MJ, Heck AJ, Leitner A, Macht M, Mann M, Martens L, Neubert TA, Patterson SD, Ping P, Seymour SL, Souda P, Tsugita A, Vandekerckhove J, Vondriska TM, Whitelegge JP, Wilkins MR, Xenarios I, Yates JR 3rd, Hermjakob H. (2007) The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol. 2007 Aug; 25(8):887-93 more »
Wilkins MR, Appel RD, Van Eyk JE, Chung MC, Görg A, Hecker M, Huber LA, Langen H, Link AJ, Paik YK, Patterson SD, Pennington SR, Rabilloud T, Simpson RJ, Weiss W, Dunn MJ. (2006) Guidelines for the next 10 years of proteomics. Proteomics. 2006 Jan;6(1):4-8 more »
Horgan GW. (2007) Sample size and replication in 2D gel electrophoresis studies. J Proteome Res. 2007 Jul; 6(7):2884-7. more »
Karp NA, Lilley KS. (2007) Design and analysis issues in quantitative proteomics studies. Proteomics. 2007 Sep; 7 Suppl 1:42-50 more »
Karp NA, McCormick PS, Russell MR, Lilley KS. (2007) Experimental and statistical considerations to avoid false conclusions in proteomics studies using differential in-gel electrophoresis. Mol Cell Proteomics. 2007 Aug; 6(8):1354-64 more »
Klie S, Martens L, Vizcaíno JA, Côté R, Jones P, Apweiler R, Hinneburg A, Hermjakob H. (2007) Analyzing Large-Scale Proteomics Projects with Latent Semantic Indexing. J Proteome Res. 2007 Nov 30; [Epub ahead of print]
Lescuyer P, Hochstrasser D, Rabilloud T.(2007) How shall we use the proteomics toolbox for biomarker discovery? J Proteome Res. 2007 Sep; 6(9):3371-6 more »
Martens L, Hermjakob H. (2007) Proteomics data validation: why all must provide data. Mol Biosyst. 2007 Aug; 3(8):518-22 more »
Picotti P, Aebersold R, Domon B. (2007) The implications of proteolytic background for shotgun proteomics. Mol Cell Proteomics. 2007 Sep;6(9):1589-98 more »
